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Machine learning applied to omics data

Calviño, Aida, Moreno-Ribera, Almudena, Pineda, Silvia

arXiv.org Artificial Intelligence

In this chapter we illustrate the use of some Machine Learning techniques in the context of omics data. More precisely, we review and evaluate the use of Random Forest and Penalized Multinomial Logistic Regression for integrative analysis of genomics and immunomics in pancreatic cancer. Furthermore, we propose the use of association rules with predictive purposes to overcome the low predictive power of the previously mentioned models. Finally, we apply the reviewed methods to a real data set from TCGA made of 107 tumoral pancreatic samples and 117,486 germline SNPs, showing the good performance of the proposed methods to predict the immunological infiltration in pancreatic cancer.


Market Basket Analysis for Coffee Shop with Apriori - Analytics Vidhya

#artificialintelligence

This article was published as a part of the Data Science Blogathon. A supermarket store named Big Mart opened a coffee shop inside the premises, and after the launch, it started seeing great transactions, and it was decided to have similar coffee shops at all the stores across the region for Big Mart. Big Mart has been using association rules for its main retail stores, and under the marketing plan for these coffee shops, they want to create similar association rules and do combo offers for these shops. Transaction data for the coffee shop relating to 9000 purchases were collected. The task is to find out the top association rules for the product team to create combo offers and use the insights to make the coffee shop even more profitable at all these stores.


Data Mining: Market Basket Analysis with Apriori Algorithm

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Some of us go to the grocery with a standard list; while some of us have a hard time sticking to our grocery shopping list, no matter how determined we are. No matter which type of person you are, retailers will always be experts at making various temptations to inflate your budget. Remember the time when you had the "Ohh, I might need this as well." Retailers boost their sales by relying on this one simple intuition. People that buy this will most likely want to buy that as well. People who buy bread will have a higher chance of buying butter together, therefore an experienced assortment manager will definitely know that having a discount on bread pushes the sales on butter as well.


Underrated Apriori Algorithm Based Unsupervised Machine Learning

#artificialintelligence

This article was published as a part of the Data Science Blogathon. I hope everyone is doing well. This pandemic provides us with more opportunities to learn new topics through the work-from-home concept, allowing us to devote more time to doing so. This prompted me to consider some mundane but intriguing topics. Yes, we will learn about Unsupervised Machine Learning algorithms in this article, specifically the Associated Rule-based – Apriori algorithm.


12 Useful Algorithms for 12 Days of Christmas

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TF-IDF stands for Term Frequency -Inverse Document Frequency, and it is used to determine how important a word is a document in a corpus (a collection of documents). Specifically, the TD-IDF value for a given word increases relative to the number of times a word appears in the document and decreases by the number of documents in the corpus that also contain that particular word. This is to account for words that are used more commonly in general. TF-IDF is a popular technique in the field of Natural Language Processing (NLP) and information retrieval. The Apriori Algorithm is an association rule algorithm and is most commonly used to determine groups of items that are most closely associated with each other in an itemset.


The FP Growth algorithm

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In this article, you will discover the FP Growth algorithm. It is one of the state-of-the-art algorithms for frequent itemset mining (also called Association Rule Mining) and basket analysis. Let's start with an introduction to Frequent Itemset Mining and Basket Analysis. Basket Analysis is the study of baskets in shopping. This can be online or offline shopping, as long as you can obtain data that tracks the products for each transaction.


Prediction of Volleyball Competition Using Machine Learning and Edge Intelligence

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Data analysis and machine learning are the backbones of the current era. Human society has entered machine learning and data science that increases the data capacity. It has been widely acknowledged that not only does the number of information increase exponentially, but also the way of human information management and processing is completed to be changed from manual to computer, mainly depending on the transformation of information technology including a computer, network, and communication. This paper is aimed at a solution to the lag of the methods and means of volleyball technique prediction in China. Through field visits, it is found that the way of analysis and research of techniques and tactics in Chinese volleyball practice is relatively backward, which to a certain extent affected the rapid development of Chinese volleyball. Therefore, it is a necessary and urgent task to realize the reform of the methods and means of volleyball technical and tactical analysis in China. The data analysis and prediction are based on the machine learning and data mining algorithm applied to volleyball in this paper is an inevitable trend. The proposed model is applied to the data produced at the edges of the systems and thoroughly analyzed. The Apriori algorithm of the machine learning algorithm is utilized to process the data and provide a prediction about the strategies of a volleyball match. The Apriori algorithm of machine learning is also optimized to perform better data analysis. The effectiveness of the proposed model is also highlighted.


ML Based Hybrid Recommendation System: Driving Growth Of Today's Businesses - SPEC INDIA

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How does YouTube, Amazon, Netflix, and many other apps keep recommending videos, products, or shows you may be interested in? Google follows your search topic everywhere a few minutes after you searched. Everyone's feed is full of personalized topics, news, and accurate recommendations based on previous activities. They use the recommender system to make recommendations about products, information, services, or audio-visual content. The majority of these systems use a hybrid approach to enhance the effectiveness and accuracy of recommendation. Let's explore what hybrid recommendation system is, why it is important in the data-driven world and everything around it.


SCR-Apriori for Mining `Sets of Contrasting Rules'

Aleksandrova, Marharyta, Chertov, Oleg

arXiv.org Machine Learning

--In this paper, we propose an efficient algorithm for mining novel'Set of Contrasting Rules'-pattern (SCR-pattern), which consists of several association rules. This pattern is of high interest due to the guaranteed quality of the rules forming it and its ability to discover useful knowledge. However, SCR-pattern has no efficient mining algorithm. We propose SCR-Apriori algorithm, which results in the same set of SCR-patterns as the state-of-the-art approache, but is less computationally expensive. We also show experimentally that by incorporating the knowledge about the pattern structure into Apriori algorithm, SCR-Apriori can significantly prune the search space of frequent itemsets to be analysed. I NTRODUCTION Association rules learning is a popular technique in data mining [1]. However, it is known that finding rules of high quality is not always an easy task [2]. This issue is even more significant in domains where the reliability of the obtained knowledge is required to be high (for example, in medicine). Also, association rules mining techniques usually generate a huge number of rules that have to be analysed by a human in order to choose meaningful and useful ones [3].


Pitako -- Recommending Game Design Elements in Cicero

Machado, Tiago, Gopstein, Dan, Nealen, Andy, Togelius, Julian

arXiv.org Artificial Intelligence

Recommender Systems are widely and successfully applied in e-commerce. Could they be used for design? In this paper, we introduce Pitako1, a tool that applies the Recommender System concept to assist humans in creative tasks. More specifically, Pitako provides suggestions by taking games designed by humans as inputs, and recommends mechanics and dynamics as outputs. Pitako is implemented as a new system within the mixed-initiative AI-based Game Design Assistant, Cicero. This paper discusses the motivation behind the implementation of Pitako as well as its technical details and presents usage examples. We believe that Pitako can influence the use of recommender systems to help humans in their daily tasks.